TFM2_18S_amplicons_analysis
lrubinat
3/9/2017
1) 18S amplicons
1.1) Data overview
The dataset “Malaspina 18S iTags” contains reads from 122 samples of Malaspina. On average, each sample contains 126100 OTUs:
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 4050 59560 98630 126100 157000 935800
Overall reads per sample:
1.2) Normalization
In order to keep as many samples as possible, we rarefy at 49975 reads per sample. By that, we loose 31 samples, and after removing the exluded samples in the 16S dataset (to make them comparable), we end up with a normalized dataset containing 43 samples and 5669 OTUs.
Datasets summary:
dim(tb18_tax) #original dataset## [1] 46690 129dim(tb18_tax_occur) #original dataset with occurrence data alone## [1] 46690 122dim(tb18_tax_occur_min49975) #dataset without samples with less than 1154 OTUs## [1] 43734 91dim(tb18_tax_occur_ss49975_no_cero) #rarefied dataset## [1] 91 382961.3) General community analysis
1.3.1) Richness and evenness (Shannon index)
Most of the samples take Shannon Index values around 6:
1.3.2) Richness: OTU number
Lowest number of OTUs per sample:
## [1] 1272Maximum number of OTUs per sample:
## [1] 5193In most of the samples, we can identify about 4000 OTUs:
1.3.3) Index of evenness
1.3.3.1) Pielou’s index
The Pielou index (constrained between 0 and 1) takes values closer to 1 as the variation of species proportion in a sample increases. Most of the samples get values between 0.7 and 0.8, meaning that the numerical composition of different OTUs in a sample is variable - there’s no constant presence of dominant species.
1.3.4) Abundance Models
Most of the OTUs show very few occurrences; suggesting that we will probably be able to identify a significant ammount of rare otus:
1.3.4.1) Rank-Abundance or Dominance/Diversity Model (“radfit”)
The OTUs abundance distribution fits relativelly close to log-normal model.
1.3.4.2) Preston’s Lognormal Model
According to Preston’s lognormal model fit into species frequencies groups, we’re missing ~2606 species:
## Extrapolated Observed Veiled
## 46340.804 43734.000 2606.804
When computing Prestons’ lognormal model fit without pooling data into groups, we miss ~2463 species:
## Extrapolated Observed Veiled
## 46197.162 43734.000 2463.1621.3.5) Rarefaction curves of rarefied and non-rarefied datasets
1.3.6) Beta diversity
1.3.6.1) Dissimilarity matrix using Bray-Curtis index:
The Bray-Curtis dissimilarity, constrained between 0 (minimum distance) and 1 (highest dissimilarity) allows us to quantify the differences between samples according to the composition and relative abundance of their OTUs. In our dataset, most of the samples pairs take dissimilarity values between between 6.5 and 7.5, meaning that their composition is different.
1.3.6.2) Hierarchical clustering
The stations seem to form clusters according to geographic localization, but there are no evident clusters separated from the general groups.
(To be done: assign Longhurst provinces information to each station and check if any of the central clusters is meaningful regarding to the samples’ geographical location)
1.3.6.3) Non-metric multidimensional scaling
We can only identify a prominent group in the central part of the NMDS plot. The stress parameter takes a value below 0.2, suggesting that the plot is acceptable.
##
## Call:
## monoMDS(dist = tb18_tax_occur_ss49975_no_cero.bray)
##
## Non-metric Multidimensional Scaling
##
## 91 points, dissimilarity 'bray', call 'vegdist(x = tb18_tax_occur_ss49975_no_cero, method = "bray")'
##
## Dimensions: 2
## Stress: 0.2049424
## Stress type 1, weak ties
## Scores scaled to unit root mean square, rotated to principal components
## Stopped after 93 iterations: Stress nearly unchanged (ratio > sratmax)
—>
1.4) Geographical analysis
Communities quickly change their composition across geographical distances:
1.4.1) Mantel correlograms
Mantel statistic is -significantlly- so low, meaning that the correlation between samples dissimilarity and geographical distances is weak.
##
## Mantel statistic based on Pearson's product-moment correlation
##
## Call:
## mantel(xdis = geo_distances_MP_18S, ydis = tb18_tax_occur_ss49975_no_cero.bray)
##
## Mantel statistic r: 0.1717
## Significance: 0.001
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0200 0.0262 0.0300 0.0337
## Permutation: free
## Number of permutations: 999Correlograms:
MP_18s_ss49975_mantel_correl_by_1000km<-mantel.correlog(tb18_tax_occur_ss49975_no_cero.bray, D.geo=geo_distances_MP_18S, break.pts=seq(0,20000, by=1000))
plot(MP_18s_ss49975_mantel_correl_by_1000km)
MP_18s_ss49975_mantel_correl_by_100km<-mantel.correlog(tb18_tax_occur_ss49975_no_cero.bray, D.geo=geo_distances_MP_18S, break.pts=seq(0,20000, by=100))
plot(MP_18s_ss49975_mantel_correl_by_100km)
1.5) Abundance vs. occurence
OTUs distribution according to their percentage of occurence and relative abundance.
- red line: OTUs that occur in more than 80% of the samples.
- blue line: regionally abundant OTUs (> 0.1%).
- green line: regionally rare OTUs (< 0.001%).
Regionally abundant OTUs (relative abundance over 0.1%):
## otu_names mean_rabund perc_occur SILVA_plus_MAS_plus_BM_classif
## 124 OTU_6 0.037133512 100.00000 <NA>
## 72 OTU_2 0.035278079 100.00000 <NA>
## 77 OTU_23 0.012394769 95.60440 <NA>
## 147 OTU_8 0.011309391 100.00000 <NA>
## 81 OTU_25 0.010661155 100.00000 Dinophyceae
## 83 OTU_27 0.010028091 100.00000 <NA>
## 1 OTU_1 0.008788350 100.00000 Dinophyceae
## 26 OTU_12 0.008670269 100.00000 <NA>
## 135 OTU_7 0.008088440 100.00000 <NA>
## 158 OTU_9 0.007784772 72.52747 <NA>
## 101 OTU_4 0.007489019 100.00000 Dinophyceae
## 73 OTU_20 0.007453837 56.04396 Pelagophyceae
## 36 OTU_13 0.007215476 97.80220 <NA>
## 13 OTU_11 0.007026150 98.90110 <NA>
## 51 OTU_14696 0.006976675 97.80220 <NA>
## 64 OTU_18 0.006839464 100.00000 Dinophyceae
## 79 OTU_24 0.006635186 98.90110 <NA>
## 86 OTU_3 0.005891077 85.71429 <NA>
## 92 OTU_34 0.005881622 70.32967 Chrysophyceae
## 74 OTU_21 0.005324420 94.50549 <NA>
## 82 OTU_26 0.005097274 96.70330 <NA>
## 112 OTU_5 0.004844180 80.21978 <NA>
## 75 OTU_22 0.004722581 90.10989 <NA>
## 107 OTU_45 0.004608238 100.00000 Dinophyceae
## 2 OTU_10 0.004578113 91.20879 <NA>
## 70 OTU_19 0.004455195 100.00000 <NA>
## 106 OTU_44 0.004413855 47.25275 Prasinophyceae
## 102 OTU_40 0.004217054 100.00000 Dinophyceae
## 60 OTU_17 0.004114805 93.40659 <NA>
## 84 OTU_28 0.004064230 94.50549 <NA>
## 113 OTU_50 0.003983530 96.70330 <NA>
## 10 OTU_106 0.003968138 87.91209 <NA>
## 52 OTU_15 0.003871166 52.74725 <NA>
## 129 OTU_64 0.003795304 100.00000 <NA>
## 96 OTU_36 0.003690197 89.01099 <NA>
## 44 OTU_14 0.003664689 92.30769 <NA>
## 136 OTU_70 0.003662491 76.92308 <NA>
## 149 OTU_81 0.003529237 98.90110 <NA>
## 120 OTU_5618 0.003488777 94.50549 <NA>
## 118 OTU_55 0.003476464 100.00000 <NA>
## 87 OTU_30 0.003453155 75.82418 <NA>
## 88 OTU_31 0.003357283 95.60440 <NA>
## 114 OTU_51 0.003293075 87.91209 <NA>
## 98 OTU_38 0.003279662 92.30769 <NA>
## 99 OTU_39 0.003169277 98.90110 Dinophyceae
## 109 OTU_47 0.003143770 75.82418 <NA>
## 90 OTU_33 0.003142230 98.90110 Dinophyceae
## 138 OTU_72 0.003071206 98.90110 <NA>
## 152 OTU_84 0.003009417 75.82418 <NA>
## 130 OTU_65 0.002956643 98.90110 <NA>
## 95 OTU_35799 0.002930036 100.00000 Dinophyceae
## 111 OTU_49 0.002898372 98.90110 Dinophyceae
## 122 OTU_58 0.002862970 70.32967 <NA>
## 115 OTU_52 0.002831526 83.51648 <NA>
## 25 OTU_119 0.002811516 29.67033 <NA>
## 103 OTU_41 0.002802720 93.40659 <NA>
## 97 OTU_37 0.002795684 95.60440 <NA>
## 104 OTU_42 0.002771276 95.60440 <NA>
## 108 OTU_46 0.002685519 29.67033 Prasinophyceae
## 105 OTU_43 0.002642200 69.23077 <NA>
## 137 OTU_71 0.002637143 100.00000 <NA>
## 110 OTU_48 0.002612955 93.40659 <NA>
## 141 OTU_75 0.002570736 97.80220 <NA>
## 134 OTU_69 0.002537533 56.04396 <NA>
## 93 OTU_35 0.002532035 87.91209 <NA>
## 131 OTU_66 0.002510706 97.80220 Dinophyceae
## 85 OTU_29 0.002497512 98.90110 <NA>
## 133 OTU_68 0.002459471 96.70330 <NA>
## 140 OTU_74 0.002440781 96.70330 <NA>
## 4 OTU_101 0.002377013 85.71429 <NA>
## 119 OTU_56 0.002323579 64.83516 <NA>
## 148 OTU_80 0.002293674 70.32967 <NA>
## 146 OTU_7889 0.002271026 84.61538 <NA>
## 128 OTU_6315 0.002209236 91.20879 <NA>
## 126 OTU_62 0.002203519 82.41758 <NA>
## 43 OTU_137 0.002195603 61.53846 <NA>
## 145 OTU_78 0.002195383 100.00000 Dinophyceae
## 153 OTU_85 0.002149646 92.30769 <NA>
## 150 OTU_82 0.002148327 90.10989 <NA>
## 139 OTU_73 0.002127437 72.52747 <NA>
## 89 OTU_32 0.002121500 78.02198 <NA>
## 116 OTU_53 0.002077522 41.75824 <NA>
## 165 OTU_96 0.002063229 68.13187 <NA>
## 156 OTU_89 0.002052015 73.62637 <NA>
## 55 OTU_16 0.002026948 36.26374 Prasinophyceae_clade-VII
## 161 OTU_92 0.002024969 78.02198 <NA>
## 154 OTU_87 0.001963839 92.30769 Dictyochophyceae
## 117 OTU_54 0.001931955 94.50549 <NA>
## 5 OTU_102 0.001915243 80.21978 <NA>
## 19 OTU_11454 0.001873684 100.00000 <NA>
## 142 OTU_76 0.001807937 90.10989 <NA>
## 21 OTU_116 0.001794084 83.51648 <NA>
## 12 OTU_109 0.001792545 68.13187 <NA>
## 132 OTU_67 0.001726358 97.80220 Dinophyceae
## 125 OTU_61 0.001705248 82.41758 <NA>
## 159 OTU_90 0.001692495 96.70330 <NA>
## 123 OTU_59 0.001688976 78.02198 <NA>
## 33 OTU_126 0.001684798 97.80220 <NA>
## 28 OTU_121 0.001661710 98.90110 Dinophyceae
## 31 OTU_124 0.001655773 85.71429 <NA>
## 121 OTU_57 0.001643679 93.40659 <NA>
## 14 OTU_110 0.001637302 85.71429 Dinophyceae
## 166 OTU_98 0.001591125 85.71429 <NA>
## 151 OTU_83 0.001584309 72.52747 <NA>
## 164 OTU_95 0.001576173 85.71429 <NA>
## 11 OTU_108 0.001561660 73.62637 <NA>
## 7 OTU_103 0.001537252 93.40659 <NA>
## 8 OTU_104 0.001532634 79.12088 <NA>
## 144 OTU_77 0.001472165 69.23077 Dinophyceae
## 9 OTU_105 0.001440720 48.35165 <NA>
## 69 OTU_1882 0.001428407 70.32967 <NA>
## 100 OTU_3988 0.001426647 78.02198 <NA>
## 15 OTU_111 0.001399821 93.40659 Dinophyceae
## 16 OTU_112 0.001388826 94.50549 Dinophyceae
## 41 OTU_135 0.001379151 90.10989 Chrysophyceae
## 155 OTU_88 0.001371675 92.30769 <NA>
## 68 OTU_188 0.001349026 95.60440 Dinophyceae
## 163 OTU_94 0.001312744 94.50549 <NA>
## 18 OTU_1136 0.001308127 98.90110 Dinophyceae
## 80 OTU_243 0.001303949 97.80220 <NA>
## 167 OTU_99 0.001289436 69.23077 <NA>
## 127 OTU_63 0.001270745 57.14286 Prasinophyceae_clade-VII
## 20 OTU_115 0.001267667 46.15385 <NA>
## 57 OTU_162 0.001257992 78.02198 <NA>
## 65 OTU_180 0.001249856 70.32967 <NA>
## 62 OTU_177 0.001248316 92.30769 <NA>
## 49 OTU_145 0.001244578 87.91209 <NA>
## 32 OTU_125 0.001238202 96.70330 <NA>
## 38 OTU_131 0.001230505 96.70330 Dictyochophyceae
## 94 OTU_35494 0.001220610 67.03297 <NA>
## 50 OTU_146 0.001212914 68.13187 <NA>
## 162 OTU_93 0.001210935 89.01099 <NA>
## 47 OTU_142 0.001210935 73.62637 Prasinophyceae_clade-IX
## 71 OTU_192 0.001205878 94.50549 <NA>
## 29 OTU_122 0.001203899 67.03297 <NA>
## 39 OTU_132 0.001194663 58.24176 <NA>
## 24 OTU_11833 0.001176852 85.71429 <NA>
## 78 OTU_235 0.001170475 86.81319 <NA>
## 56 OTU_161 0.001162779 57.14286 <NA>
## 59 OTU_165 0.001157722 81.31868 <NA>
## 66 OTU_1819 0.001156842 71.42857 <NA>
## 45 OTU_140 0.001144089 82.41758 <NA>
## 160 OTU_91 0.001141890 65.93407 <NA>
## 34 OTU_128 0.001141450 85.71429 <NA>
## 42 OTU_136 0.001137932 52.74725 <NA>
## 61 OTU_174 0.001133754 72.52747 <NA>
## 6 OTU_10246 0.001132874 72.52747 <NA>
## 17 OTU_113 0.001132214 73.62637 <NA>
## 35 OTU_129 0.001116162 68.13187 Chrysophyceae
## 63 OTU_179 0.001112644 76.92308 <NA>
## 143 OTU_767 0.001111105 28.57143 <NA>
## 37 OTU_130 0.001101210 98.90110 <NA>
## 46 OTU_141 0.001084718 67.03297 <NA>
## 91 OTU_338 0.001072404 95.60440 Dinophyceae
## 157 OTU_8924 0.001059871 72.52747 <NA>
## 27 OTU_120 0.001059431 69.23077 <NA>
## 30 OTU_123 0.001052394 75.82418 <NA>
## 53 OTU_151 0.001051295 69.23077 Chrysophyceae
## 58 OTU_163 0.001045138 78.02198 <NA>
## 23 OTU_118 0.001042719 70.32967 <NA>
## 22 OTU_117 0.001040300 91.20879 <NA>
## 54 OTU_157 0.001035903 40.65934 <NA>
## 67 OTU_1842 0.001034363 95.60440 Dinophyceae
## 48 OTU_144 0.001022489 92.30769 <NA>
## 76 OTU_220 0.001016332 95.60440 <NA>
## 40 OTU_133 0.001012154 57.14286 <NA>
## 3 OTU_100 0.001003799 64.83516 <NA>
## SILVA_classif
## 124 EF172947.1.1553_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 72 FJ832119.1.1585_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_picoplankton
## 77 FR874416.1.1792_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_picoeukaryote
## 147 EU780613.1.1717_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 81 AY664971.1.1755_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 83 KC488491.1.1699_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;uncultured_marine_alveolate
## 1 KC488417.1.1688_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gymnodinium_clade;FV18-2D9;uncultured_dinoflagellate
## 26 EU793930.1.1664_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 135 KC582919.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 158 EF620525.1.1716_Eukaryota;SAR;Stramenopiles;Bicosoecida;Cafeteria;uncultured_bicosoecid
## 101 KC488405.1.1558_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gymnodinium_clade;Erythropsidinium;uncultured_dinoflagellate
## 73 EF455763.1.1872_Eukaryota;SAR;Stramenopiles;Ochrophyta;Pelagophyceae;Pelagomonadales;Pelagomonas;Pelagomonas_calceolata
## 36 JX188350.1.1750_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 13 JX188308.1.1760_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;uncultured_eukaryote
## 51 FJ832119.1.1585_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_picoplankton
## 64 AY664924.1.1754_Eukaryota;SAR;Alveolata;OLI11255;uncultured_eukaryote
## 79 EU780594.1.1712_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 86 EF172960.1.1674_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 92 JQ782092.1.1744_Eukaryota;SAR;Stramenopiles;Ochrophyta;Chrysophyceae;uncultured;uncultured_stramenopile
## 74 KC488485.1.1680_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_alveolate
## 82 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 112 EU793901.1.1663_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 75 KC582930.1.1796_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 107 GU825491.1.1212_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;uncultured_eukaryote
## 2 EU793418.1.1665_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 70 JX188306.1.1756_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_eukaryote
## 106 KC583113.1.1768_Eukaryota;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Bathycoccus;uncultured_Chlorophyta
## 102 KC582936.1.1795_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;SCM27C9;uncultured_alveolate
## 60 KC582887.1.1798_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 84 EU371330.1.1733_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_eukaryote
## 113 JQ781967.1.1805_Eukaryota;SAR;Stramenopiles;MAST-4;uncultured_stramenopile
## 10 AY665056.1.1740_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 52 EU106851.1.1693_Eukaryota;SAR;Stramenopiles;Bicosoecida;Caecitellus;Caecitellus_sp._RCC1078
## 129 JX188299.1.1773_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 96 FJ832105.1.1591_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_plankton
## 44 KC582897.1.1794_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 136 EU793901.1.1663_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 149 JQ782026.1.1809_Eukaryota;SAR;Stramenopiles;MAST-3;MAST-3F;uncultured_stramenopile
## 120 AACY020216037.2.1465_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;marine_metagenome
## 118 GU823346.1.1201_Eukaryota;SAR;Stramenopiles;MAST-1;MAST-1D;uncultured_stramenopile
## 87 KC488492.1.1682_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_alveolate
## 88 AY129057.1.1798_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_eukaryote
## 114 AY665031.1.1749_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 98 KC488409.1.1674_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_dinoflagellate
## 99 FJ832106.1.1588_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gyrodinium;uncultured_marine_plankton
## 109 EF172947.1.1553_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 90 AY664962.1.1755_Eukaryota;SAR;Alveolata;Dinoflagellata;uncultured_eukaryote
## 138 EU371330.1.1733_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_eukaryote
## 152 EU793371.1.1679_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 130 JF791018.1.1777_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 95 AY664971.1.1755_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 111 KC488407.1.1693_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;B7;uncultured_dinoflagellate
## 122 GU819935.1.1201_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Duboscquella;uncultured_dinoflagellate
## 115 KC488460.1.1689_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_alveolate
## 25 EU647057.1.1189_Eukaryota;Opisthokonta;Nucletmycea;Fungi;Dikarya;Basidiomycota;Pucciniomycotina;Microbotryomycetes;Sporidiobolales;uncultured_Pucciniomycotina
## 103 EU793370.1.1678_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_syndiniales
## 97 AY665036.1.1748_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 104 AY749516.1.1576_Eukaryota;Centrohelida;H26-1;uncultured_eukaryote
## 108 KC583129.1.1754_Eukaryota;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;uncultured_Chlorophyta
## 105 EU780623.1.1645_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 137 JQ782036.1.1785_Eukaryota;SAR;Stramenopiles;MAST-1;MAST-1C;uncultured_stramenopile
## 110 EU793381.1.1670_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 141 AJ402349.1.1758_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;eukaryote_clone_OLI11005
## 134 EF172922.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 93 GU820026.1.1394_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 131 JX188327.1.1759_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Kareniaceae;Karlodinium;uncultured_eukaryote
## 85 DQ222879.1.1791_Eukaryota;Picozoa;Picomonadea;uncultured_phototrophic_eukaryote
## 133 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 140 KC582890.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 4 FJ832116.1.1590_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_plankton
## 119 EU793901.1.1663_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 148 KC488477.1.1670_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_alveolate
## 146 JQ420086.1.1778_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_phytoplankton
## 128 EU793392.1.1594_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_syndiniales
## 126 <NA>
## 43 EU561890.1.1731_Eukaryota;SAR;Stramenopiles;MAST-3;MAST-3A;uncultured_marine_eukaryote
## 145 KC582936.1.1795_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;SCM27C9;uncultured_alveolate
## 153 EU793367.1.1601_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 150 JX840917.1.1201_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 139 KC583009.1.1804_Eukaryota;SAR;Stramenopiles;MAST-4;uncultured_stramenopile
## 89 EU793925.1.1594_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 116 AY520446.1.1695_Eukaryota;SAR;Stramenopiles;Bicosoecida;Caecitellus;Caecitellus_parvulus
## 165 KC582949.1.1792_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 156 KC583046.1.1798_Eukaryota;SAR;Rhizaria;Retaria;RAD_B;uncultured_Rhizaria
## 55 KF031720.1.1747_Eukaryota;Archaeplastida;Chloroplastida;Chlorophyta;Clade_VII;Subclade_B;uncultured_eukaryote
## 161 <NA>
## 154 <NA>
## 117 DQ145114.1.1728_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 5 GU820026.1.1394_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 19 EU793918.1.1662_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 142 KC582884.1.1799_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 21 KC582930.1.1796_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 12 EF172904.1.1680_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 132 EU446398.1.1566_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Kareniaceae;Karlodinium;uncultured_marine_eukaryote
## 125 JN811213.1.1672_Eukaryota;SAR;Rhizaria;Retaria;Acantharia;Arthracanthida;Acanthometra;Xiphacantha_alata
## 159 AJ402349.1.1758_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;eukaryote_clone_OLI11005
## 123 GU246573.1.1787_Eukaryota;SAR;Rhizaria;Retaria;Acantharia;Arthracanthida;Acanthometra;Acanthometra_sp._2_7202
## 33 HQ868687.1.903_Eukaryota;Picozoa;Picomonadea;Picomonadida;uncultured_eukaryote
## 28 JX840913.1.1300_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 31 KC582893.1.1795_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 121 FN263031.1.1789_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 14 JX188356.1.1758_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 166 JX188283.1.1756_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 151 JN832733.1.1713_Eukaryota;Cryptophyceae;Kathablepharidae;Leucocryptos;uncultured_eukaryote
## 164 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 11 <NA>
## 7 <NA>
## 8 EU793688.1.1653_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 144 FJ626714.1.1769_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;SL163A10;uncultured_marine_eukaryote
## 9 EF050072.1.1712_Eukaryota;SAR;Stramenopiles;Bicosoecida;Caecitellus;uncultured_picobiliphyte
## 69 JX188283.1.1756_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 100 GU820421.1.1200_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_dinoflagellate
## 15 AY664888.1.1754_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;SCM37C58;uncultured_eukaryote
## 16 EF526792.1.1343_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_marine_eukaryote
## 41 KC582995.1.1780_Eukaryota;SAR;Stramenopiles;Ochrophyta;Chrysophyceae;E222;uncultured_stramenopile
## 155 EU793678.1.1564_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 68 EU780618.1.1706_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;SCM27C9;uncultured_eukaryote
## 163 EU780603.1.1587_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 18 JX188293.1.1759_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 80 JX840907.1.1356_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;uncultured_dinoflagellate
## 167 KC488471.1.1700_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_alveolate
## 127 KC583085.1.1776_Eukaryota;Archaeplastida;Chloroplastida;Chlorophyta;Clade_VII;Subclade_A;uncultured_Chlorophyta
## 20 <NA>
## 57 <NA>
## 65 KC582949.1.1792_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 62 EU780589.1.1635_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 49 KC582941.1.1793_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 32 GU823346.1.1201_Eukaryota;SAR;Stramenopiles;MAST-1;MAST-1D;uncultured_stramenopile
## 38 KC582988.1.1798_Eukaryota;SAR;Stramenopiles;Ochrophyta;Dictyochophyceae;Pedinellales;uncultured_stramenopile
## 94 KF031708.1.1743_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 50 <NA>
## 162 EU793840.1.1684_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 47 JX188280.1.1747_Eukaryota;Archaeplastida;Chloroplastida;Chlorophyta;Clade_IX;uncultured_eukaryote
## 71 GU819857.1.1220_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_dinoflagellate
## 29 <NA>
## 39 <NA>
## 24 EU793930.1.1664_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 78 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 56 JX840914.1.1343_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 59 JQ782054.1.1813_Eukaryota;SAR;Stramenopiles;MAST-4;uncultured_stramenopile
## 66 KC582919.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 45 AY665036.1.1748_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 160 EF172944.1.1676_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 34 KC582920.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 42 KC582949.1.1792_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 61 JX840900.1.1305_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 6 AY129066.1.1807_Eukaryota;SAR;Stramenopiles;MAST-4;MAST-4B;uncultured_marine_eukaryote
## 17 GU820026.1.1394_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 35 FJ537356.1.1779_Eukaryota;SAR;Stramenopiles;Ochrophyta;Chrysophyceae;LG01-09;uncultured_marine_chrysophyte
## 63 AY665056.1.1740_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 143 JF826336.1.1604_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_alveolate
## 37 JX173254.1.1528_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;Amoebophrya_sp._ex_Alexandrium_sp
## 46 JX188350.1.1750_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 91 AF022199.1.1803_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gymnodinium_clade;Lepidodinium;Lepidodinium_viride
## 157 FJ914455.1.1433_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_dinoflagellate
## 27 <NA>
## 30 KC488339.1.1675_Eukaryota;Picozoa;Picomonadea;Picomonadida;uncultured_biliphyte
## 53 FJ537347.1.1751_Eukaryota;SAR;Stramenopiles;Ochrophyta;Chrysophyceae;E222;uncultured_marine_chrysophyte
## 58 KC582881.1.1799_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 23 GU823500.1.1392_Eukaryota;SAR;Stramenopiles;MAST-7;MAST-7B;uncultured_stramenopile
## 22 GQ365865.1.1537_Eukaryota;Incertae_Sedis;Telonema;uncultured_eukaryote
## 54 EF173015.1.1676_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 67 JX840913.1.1300_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 48 JN832733.1.1713_Eukaryota;Cryptophyceae;Kathablepharidae;Leucocryptos;uncultured_eukaryote
## 76 AF239260.1.1699_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;Amoebophrya_sp._'Dinophysis'
## 40 JN832831.1.1719_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 3 DQ186530.1.1762_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## MAS_classif
## 124 GQ913047_MALV-I_Alveolata
## 72 EU793773_MALV-I_Alveolata
## 77 EU793423_MALV-I_Alveolata
## 147 FJ537505_MALV-II_Alveolata
## 81 FJ537481_Dinophyceae_Alveolata
## 83 FJ431657_MALV-III_Alveolata
## 1 EU793855_Dinophyceae_Alveolata
## 26 EU793468_MALV-II_Alveolata
## 135 EU793854_MALV-II_Alveolata
## 158 AF174365_Bicosoecids_Stramenopiles
## 101 EU780636_Dinophyceae_Alveolata
## 73 U14389_Pelagophytes_Stramenopiles
## 36 EU793270_MALV-I_Alveolata
## 13 GQ382836_MALV-III_Alveolata
## 51 AY426873_MALV-I_Alveolata
## 64 EU793623_Dinophyceae_Alveolata
## 79 EU793869_MALV-II_Alveolata
## 86 EU793316_MALV-II_Alveolata
## 92 EF633325_Chrysophytes_Stramenopiles
## 74 EU561962_MALV-I_Alveolata
## 82 EU793161_MALV-I_Alveolata
## 112 EU818388_MALV-I_Alveolata
## 75 EU562164_MALV-II_Alveolata
## 107 EU793487_Dinophyceae_Alveolata
## 2 EU818180_MALV-II_Alveolata
## 70 EU793472_MALV-V_Alveolata
## 106 ZZ0025910_Prasinophyceae_Chlorophyta
## 102 EU793835_Dinophyceae_Alveolata
## 60 EU793396_MALV-II_Alveolata
## 84 EU793876_MALV-I_Alveolata
## 113 JQ782043_MAST-4A_Stramenopiles
## 10 EU818437_MALV-I_Alveolata
## 52 EU106844_Bicosoecids_Stramenopiles
## 129 EU793397_MALV-I_Alveolata
## 96 EU793662_MALV-II_Alveolata
## 44 EU793496_MALV-II_Alveolata
## 136 EU817894_MALV-I_Alveolata
## 149 EF172961_MAST-3A_Stramenopiles
## 120 EU793591_MALV-II_Alveolata
## 118 JQ781940_MAST-1D_Stramenopiles
## 87 EU793526_MALV-II_Alveolata
## 88 AY129057_MALV-II_Alveolata
## 114 EU793570_MALV-I_Alveolata
## 98 EU818099_MALV-I_Alveolata
## 99 EU561942_Dinophyceae_Alveolata
## 109 EU793333_MALV-I_Alveolata
## 90 GQ382841_Dinophyceae_Alveolata
## 138 EU793665_MALV-I_Alveolata
## 152 EU793307_MALV-I_Alveolata
## 130 EU793454_MALV-II_Alveolata
## 95 FJ537481_Dinophyceae_Alveolata
## 111 AY426916_Dinophyceae_Alveolata
## 122 EU562061_MALV-I_Alveolata
## 115 AY665057_MALV-I_Alveolata
## 25 AB021668_Basidiomycota_Fungi
## 103 EU562105_MALV-V_Alveolata
## 97 EU793849_MALV-I_Alveolata
## 104 EU500119_Centroheliozoa_Hacrobia
## 108 EU561670_Prasinophyceae_Chlorophyta
## 105 EU780623_MALV-I_Alveolata
## 137 JQ782036_MAST-1C_Stramenopiles
## 110 EU793900_MALV-II_Alveolata
## 141 DQ917937_MALV-III_Alveolata
## 134 EU818483_MALV-II_Alveolata
## 93 FJ537453_MALV-II_Alveolata
## 131 EU793310_Dinophyceae_Alveolata
## 85 ZZ0026100_Picobiliphyta_Hacrobia
## 133 EU817904_MALV-I_Alveolata
## 140 EU793160_MALV-II_Alveolata
## 4 EU793860_MALV-II_Alveolata
## 119 EU817899_MALV-I_Alveolata
## 148 EU818332_MALV-II_Alveolata
## 146 EU561991_MALV-I_Alveolata
## 128 EU793880_MALV-V_Alveolata
## 126 EU818263_MALV-II_Alveolata
## 43 GQ863794_MAST-3A_Stramenopiles
## 145 EU818104_Dinophyceae_Alveolata
## 153 EU793151_MALV-II_Alveolata
## 150 FJ537409_MALV-II_Alveolata
## 139 EF172962_MAST-4C_Stramenopiles
## 89 EU793455_MALV-II_Alveolata
## 116 EF620527_Bicosoecids_Stramenopiles
## 165 EU793858_MALV-I_Alveolata
## 156 <NA>
## 55 FJ537299_Prasinophyceae_Chlorophyta
## 161 EU793851_MALV-I_Alveolata
## 154 <NA>
## 117 EU793359_MALV-I_Alveolata
## 5 DQ918857_MALV-II_Alveolata
## 19 GQ913054_MALV-I_Alveolata
## 142 EU817983_MALV-II_Alveolata
## 21 AY937485_MALV-II_Alveolata
## 12 FJ431848_MALV-II_Alveolata
## 132 EU500204_Dinophyceae_Alveolata
## 125 GQ913026_Acantharea_Rhizaria
## 159 EU793515_MALV-III_Alveolata
## 123 AJ402332_Acantharea_Rhizaria
## 33 EF539143_Picobiliphyta_Hacrobia
## 28 EU561774_Dinophyceae_Alveolata
## 31 EU793353_MALV-II_Alveolata
## 121 GQ382775_MALV-I_Alveolata
## 14 EU561885_Dinophyceae_Alveolata
## 166 EU817986_MALV-II_Alveolata
## 151 EU561799_Katablepharidales_Hacrobia
## 164 EU793360_MALV-I_Alveolata
## 11 EU561778_MALV-II_Alveolata
## 7 EU500081_MAST-25_Stramenopiles
## 8 EU793411_MALV-II_Alveolata
## 144 AY938395_Dinophyceae_Alveolata
## 9 AY827847_Bicosoecids_Stramenopiles
## 69 EU817986_MALV-II_Alveolata
## 100 EU793284_MALV-V_Alveolata
## 15 EU780632_Dinophyceae_Alveolata
## 16 EF526792_Dinophyceae_Alveolata
## 41 EF172998_Chrysophytes_Stramenopiles
## 155 EU818216_MALV-II_Alveolata
## 68 EU780618_Dinophyceae_Alveolata
## 163 EU561765_MALV-I_Alveolata
## 18 EU793725_Dinophyceae_Alveolata
## 80 AJ965134_MALV-II_Alveolata
## 167 EU793469_MALV-II_Alveolata
## 127 AY425303_Prasinophyceae_Chlorophyta
## 20 EU562016_MALV-I_Alveolata
## 57 ZZ0071148_MALV-II_Alveolata
## 65 EU793313_MALV-I_Alveolata
## 62 DQ918674_MALV-I_Alveolata
## 49 FJ537539_MALV-II_Alveolata
## 32 EF173010_MAST-1D_Stramenopiles
## 38 AB241.O08_Dictyochophytes_Stramenopiles
## 94 DQ918838_MALV-I_Alveolata
## 50 EU818469_MALV-II_Alveolata
## 162 EU793592_MALV-II_Alveolata
## 47 FJ537325_Prasinophyceae_Chlorophyta
## 71 GQ382521_MALV-I_Alveolata
## 29 EU500010_MALV-I_Alveolata
## 39 <NA>
## 24 EU793468_MALV-II_Alveolata
## 78 EU793161_MALV-I_Alveolata
## 56 FJ431832_MALV-II_Alveolata
## 59 HQ869203_MAST-4E_Stramenopiles
## 66 AY295383_MALV-II_Alveolata
## 45 EU793607_MALV-I_Alveolata
## 160 EU561794_MALV-I_Alveolata
## 34 EU793410_MALV-II_Alveolata
## 42 EU793509_MALV-I_Alveolata
## 61 EU793203_MALV-II_Alveolata
## 6 AY129066_MAST-4B_Stramenopiles
## 17 EU793134_MALV-II_Alveolata
## 35 FJ537351_Chrysophytes_Stramenopiles
## 63 EU817989_MALV-I_Alveolata
## 143 EU793879_MALV-I_Alveolata
## 37 EU793906_MALV-II_Alveolata
## 46 EU793500_MALV-I_Alveolata
## 91 AY938154_Dinophyceae_Alveolata
## 157 EU793914_MALV-II_Alveolata
## 27 GQ382358_MALV-I_Alveolata
## 30 EF172850_Picobiliphyta_Hacrobia
## 53 AY129063_Chrysophytes_Stramenopiles
## 58 EF172987_MALV-II_Alveolata
## 23 EU499985_MAST-7B_Stramenopiles
## 22 DQ119999_Telonemia_Hacrobia
## 54 EU818510_MALV-I_Alveolata
## 67 EU793623_Dinophyceae_Alveolata
## 48 EU561799_Katablepharidales_Hacrobia
## 76 GQ383169_MALV-II_Alveolata
## 40 GQ913086_MALV-II_Alveolata
## 3 FJ431830_MALV-II_Alveolata
## BM_classif
## 124 32_MALV-I_Alveolata_15673
## 72 3261_MALV-I_Alveolata_385
## 77 75_MALV-I_Alveolata_3817
## 147 173_MALV-II_Alveolata_516
## 81 5651_Dinophyceae_Alveolata_249
## 83 38_MALV-III_Alveolata_6570
## 1 9492_Dinophyceae_Alveolata_15
## 26 159_MALV-II_Alveolata_1129
## 135 549_MALV-II_Alveolata_410
## 158 <NA>
## 101 21474_Dinophyceae_Alveolata_6
## 73 30_Pelagophyceae_Stramenopiles_3903
## 36 110_MALV-I_Alveolata_871
## 13 70_MALV-III_Alveolata_4778
## 51 3261_MALV-I_Alveolata_385
## 64 16659_Dinophyceae_Alveolata_16
## 79 2230_MALV-II_Alveolata_177
## 86 <NA>
## 92 2777_Chrysophyceae_Stramenopiles_14
## 74 408_MALV-I_Alveolata_437
## 82 12073_MALV-I_Alveolata_80
## 112 398_MALV-I_Alveolata_395
## 75 437_MALV-II_Alveolata_11
## 107 19832_Dinophyceae_Alveolata_6
## 2 437_MALV-II_Alveolata_11
## 70 269_MALV-V_Alveolata_430
## 106 31_Mamiellophyceae_Archaeplastida_4744
## 102 1849_Dinophyceae_Alveolata_250
## 60 538_MALV-II_Alveolata_49
## 84 90_MALV-I_Alveolata_1447
## 113 127_MAST-4_Stramenopiles_1171
## 10 90_MALV-I_Alveolata_1447
## 52 <NA>
## 129 10705_MALV-I_Alveolata_87
## 96 234_MALV-II_Alveolata_626
## 44 396_MALV-II_Alveolata_141
## 136 398_MALV-I_Alveolata_395
## 149 5352_MAST-3_Stramenopiles_16
## 120 159_MALV-II_Alveolata_1129
## 118 135_MAST-1_Stramenopiles_1096
## 87 437_MALV-II_Alveolata_11
## 88 372_MALV-II_Alveolata_174
## 114 195_MALV-I_Alveolata_265
## 98 161_MALV-I_Alveolata_1735
## 99 60_Dinophyceae_Alveolata_2847
## 109 32_MALV-I_Alveolata_15673
## 90 5854_Dinophyceae_Alveolata_118
## 138 2689_MALV-I_Alveolata_92
## 152 83_MALV-I_Alveolata_2111
## 130 11869_MALV-II_Alveolata_32
## 95 5651_Dinophyceae_Alveolata_249
## 111 63_Dinophyceae_Alveolata_4010
## 122 6219_MALV-I_Alveolata_13
## 115 152_MALV-I_Alveolata_1517
## 25 3036_Basidiomycota_Fungi_13
## 103 269_MALV-V_Alveolata_430
## 97 320_MALV-I_Alveolata_280
## 104 228_Centrohelida_Hacrobia_542
## 108 13549_Mamiellophyceae_Archaeplastida_22
## 105 140_MALV-I_Alveolata_296
## 137 129_MAST-1_Stramenopiles_1402
## 110 666_MALV-II_Alveolata_7
## 141 92_MALV-III_Alveolata_2457
## 134 592_MALV-II_Alveolata_99
## 93 779_MALV-II_Alveolata_39
## 131 250_Dinophyceae_Alveolata_874
## 85 96_Picozoa_Hacrobia_1708
## 133 10506_MALV-I_Alveolata_3
## 140 6845_MALV-II_Alveolata_162
## 4 12035_MALV-II_Alveolata_25
## 119 398_MALV-I_Alveolata_395
## 148 185_MALV-II_Alveolata_315
## 146 75_MALV-I_Alveolata_3817
## 128 269_MALV-V_Alveolata_430
## 126 698_MALV-II_Alveolata_96
## 43 1130_MAST-3_Stramenopiles_92
## 145 181_Dinophyceae_Alveolata_934
## 153 143_MALV-II_Alveolata_365
## 150 666_MALV-II_Alveolata_7
## 139 891_MAST-4_Stramenopiles_115
## 89 1440_MALV-II_Alveolata_413
## 116 2638_Bicosoecida_Stramenopiles_17
## 165 168_MALV-I_Alveolata_655
## 156 863_Polycystinea_Rhizaria_40
## 55 1062_Prasinophyceae_Archaeplastida_88
## 161 <NA>
## 154 512_Dictyochophyceae_Stramenopiles_107
## 117 110_MALV-I_Alveolata_871
## 5 583_MALV-II_Alveolata_48
## 19 10705_MALV-I_Alveolata_87
## 142 1768_MALV-II_Alveolata_24
## 21 437_MALV-II_Alveolata_11
## 12 592_MALV-II_Alveolata_99
## 132 9883_Dinophyceae_Alveolata_11
## 125 46_Acantharia_Rhizaria_1903
## 159 373_MALV-III_Alveolata_220
## 123 1_Acantharia_Rhizaria_54126
## 33 64_Picozoa_Hacrobia_4926
## 28 2659_Dinophyceae_Alveolata_438
## 31 1019_MALV-II_Alveolata_76
## 121 5250_MALV-I_Alveolata_344
## 14 3063_Dinophyceae_Alveolata_28
## 166 173_MALV-II_Alveolata_516
## 151 299_Katablepharidae_Hacrobia_783
## 164 9794_MALV-I_Alveolata_9
## 11 <NA>
## 7 470_MAST-25_Stramenopiles_101
## 8 183_MALV-II_Alveolata_589
## 144 19112_Dinophyceae_Alveolata_32
## 9 2638_Bicosoecida_Stramenopiles_17
## 69 9452_MALV-II_Alveolata_18
## 100 269_MALV-V_Alveolata_430
## 15 15157_Dinophyceae_Alveolata_44
## 16 4619_Dinophyceae_Alveolata_56
## 41 524_Chrysophyceae_Stramenopiles_220
## 155 183_MALV-II_Alveolata_589
## 68 6794_Dinophyceae_Alveolata_12
## 163 274_MALV-I_Alveolata_291
## 18 12262_Dinophyceae_Alveolata_20
## 80 449_MALV-II_Alveolata_595
## 167 9413_MALV-II_Alveolata_19
## 127 91_Prasinophyceae_Archaeplastida_63
## 20 812_MALV-I_Alveolata_38
## 57 <NA>
## 65 168_MALV-I_Alveolata_655
## 62 979_MALV-I_Alveolata_83
## 49 15297_MALV-II_Alveolata_17
## 32 5093_MAST-1_Stramenopiles_47
## 38 1696_Dictyochophyceae_Stramenopiles_41
## 94 152_MALV-I_Alveolata_1517
## 50 1531_MALV-II_Alveolata_17
## 162 13359_MALV-II_Alveolata_15
## 47 724_Prasinophyceae_Archaeplastida_125
## 71 4958_MALV-I_Alveolata_259
## 29 <NA>
## 39 1257_Acantharia_Rhizaria_46
## 24 159_MALV-II_Alveolata_1129
## 78 12073_MALV-I_Alveolata_80
## 56 3663_MALV-II_Alveolata_17
## 59 256_MAST-4_Stramenopiles_625
## 66 549_MALV-II_Alveolata_410
## 45 320_MALV-I_Alveolata_280
## 160 879_MALV-I_Alveolata_129
## 34 1019_MALV-II_Alveolata_76
## 42 168_MALV-I_Alveolata_655
## 61 8096_MALV-II_Alveolata_7
## 6 127_MAST-4_Stramenopiles_1171
## 17 1073_MALV-II_Alveolata_82
## 35 218_Chrysophyceae_Stramenopiles_618
## 63 <NA>
## 143 3261_MALV-I_Alveolata_385
## 37 329_MALV-II_Alveolata_831
## 46 110_MALV-I_Alveolata_871
## 91 9_Dinophyceae_Alveolata_61014
## 157 9413_MALV-II_Alveolata_19
## 27 <NA>
## 30 18617_Picozoa_Hacrobia_21
## 53 556_Chrysophyceae_Stramenopiles_160
## 58 815_MALV-II_Alveolata_98
## 23 87_MAST-7_Stramenopiles_1839
## 22 201_Telonema_Hacrobia_877
## 54 13516_MALV-I_Alveolata_25
## 67 13136_Dinophyceae_Alveolata_79
## 48 299_Katablepharidae_Hacrobia_783
## 76 431_MALV-II_Alveolata_283
## 40 1073_MALV-II_Alveolata_82
## 3 234_MALV-II_Alveolata_626Number and roportion of regionally abundant OTUs (%):
## [1] 167## [1] 0.4360769
Cosmopolitan OTUs (relative abundance over 0.1% and occurence in more than 80% of samples):
## otu_names mean_rabund perc_occur
## 77 OTU_6 0.037133512 100.00000
## 39 OTU_2 0.035278079 100.00000
## 94 OTU_8 0.011309391 100.00000
## 47 OTU_25 0.010661155 100.00000
## 49 OTU_27 0.010028091 100.00000
## 1 OTU_1 0.008788350 100.00000
## 16 OTU_12 0.008670269 100.00000
## 86 OTU_7 0.008088440 100.00000
## 62 OTU_4 0.007489019 100.00000
## 34 OTU_18 0.006839464 100.00000
## 66 OTU_45 0.004608238 100.00000
## 37 OTU_19 0.004455195 100.00000
## 63 OTU_40 0.004217054 100.00000
## 81 OTU_64 0.003795304 100.00000
## 74 OTU_55 0.003476464 100.00000
## 57 OTU_35799 0.002930036 100.00000
## 87 OTU_71 0.002637143 100.00000
## 92 OTU_78 0.002195383 100.00000
## 12 OTU_11454 0.001873684 100.00000
## 7 OTU_11 0.007026150 98.90110
## 45 OTU_24 0.006635186 98.90110
## 95 OTU_81 0.003529237 98.90110
## 61 OTU_39 0.003169277 98.90110
## 54 OTU_33 0.003142230 98.90110
## 88 OTU_72 0.003071206 98.90110
## 82 OTU_65 0.002956643 98.90110
## 68 OTU_49 0.002898372 98.90110
## 51 OTU_29 0.002497512 98.90110
## 17 OTU_121 0.001661710 98.90110
## 11 OTU_1136 0.001308127 98.90110
## 23 OTU_130 0.001101210 98.90110
## 22 OTU_13 0.007215476 97.80220
## 30 OTU_14696 0.006976675 97.80220
## 90 OTU_75 0.002570736 97.80220
## 83 OTU_66 0.002510706 97.80220
## 84 OTU_67 0.001726358 97.80220
## 20 OTU_126 0.001684798 97.80220
## 46 OTU_243 0.001303949 97.80220
## 48 OTU_26 0.005097274 96.70330
## 70 OTU_50 0.003983530 96.70330
## 85 OTU_68 0.002459471 96.70330
## 89 OTU_74 0.002440781 96.70330
## 100 OTU_90 0.001692495 96.70330
## 19 OTU_125 0.001238202 96.70330
## 24 OTU_131 0.001230505 96.70330
## 43 OTU_23 0.012394769 95.60440
## 53 OTU_31 0.003357283 95.60440
## 59 OTU_37 0.002795684 95.60440
## 65 OTU_42 0.002771276 95.60440
## 36 OTU_188 0.001349026 95.60440
## 55 OTU_338 0.001072404 95.60440
## 35 OTU_1842 0.001034363 95.60440
## 42 OTU_220 0.001016332 95.60440
## 40 OTU_21 0.005324420 94.50549
## 50 OTU_28 0.004064230 94.50549
## 75 OTU_5618 0.003488777 94.50549
## 73 OTU_54 0.001931955 94.50549
## 10 OTU_112 0.001388826 94.50549
## 102 OTU_94 0.001312744 94.50549
## 38 OTU_192 0.001205878 94.50549
## 32 OTU_17 0.004114805 93.40659
## 64 OTU_41 0.002802720 93.40659
## 67 OTU_48 0.002612955 93.40659
## 76 OTU_57 0.001643679 93.40659
## 5 OTU_103 0.001537252 93.40659
## 9 OTU_111 0.001399821 93.40659
## 26 OTU_14 0.003664689 92.30769
## 60 OTU_38 0.003279662 92.30769
## 97 OTU_85 0.002149646 92.30769
## 98 OTU_87 0.001963839 92.30769
## 99 OTU_88 0.001371675 92.30769
## 33 OTU_177 0.001248316 92.30769
## 28 OTU_144 0.001022489 92.30769
## 2 OTU_10 0.004578113 91.20879
## 80 OTU_6315 0.002209236 91.20879
## 14 OTU_117 0.001040300 91.20879
## 41 OTU_22 0.004722581 90.10989
## 96 OTU_82 0.002148327 90.10989
## 91 OTU_76 0.001807937 90.10989
## 25 OTU_135 0.001379151 90.10989
## 58 OTU_36 0.003690197 89.01099
## 101 OTU_93 0.001210935 89.01099
## 6 OTU_106 0.003968138 87.91209
## 71 OTU_51 0.003293075 87.91209
## 56 OTU_35 0.002532035 87.91209
## 29 OTU_145 0.001244578 87.91209
## 44 OTU_235 0.001170475 86.81319
## 52 OTU_3 0.005891077 85.71429
## 3 OTU_101 0.002377013 85.71429
## 18 OTU_124 0.001655773 85.71429
## 8 OTU_110 0.001637302 85.71429
## 104 OTU_98 0.001591125 85.71429
## 103 OTU_95 0.001576173 85.71429
## 15 OTU_11833 0.001176852 85.71429
## 21 OTU_128 0.001141450 85.71429
## 93 OTU_7889 0.002271026 84.61538
## 72 OTU_52 0.002831526 83.51648
## 13 OTU_116 0.001794084 83.51648
## 79 OTU_62 0.002203519 82.41758
## 78 OTU_61 0.001705248 82.41758
## 27 OTU_140 0.001144089 82.41758
## 31 OTU_165 0.001157722 81.31868
## 69 OTU_5 0.004844180 80.21978
## 4 OTU_102 0.001915243 80.21978
## MAS_classif
## 77 GQ913047_MALV-I_Alveolata
## 39 EU793773_MALV-I_Alveolata
## 94 FJ537505_MALV-II_Alveolata
## 47 FJ537481_Dinophyceae_Alveolata
## 49 FJ431657_MALV-III_Alveolata
## 1 EU793855_Dinophyceae_Alveolata
## 16 EU793468_MALV-II_Alveolata
## 86 EU793854_MALV-II_Alveolata
## 62 EU780636_Dinophyceae_Alveolata
## 34 EU793623_Dinophyceae_Alveolata
## 66 EU793487_Dinophyceae_Alveolata
## 37 EU793472_MALV-V_Alveolata
## 63 EU793835_Dinophyceae_Alveolata
## 81 EU793397_MALV-I_Alveolata
## 74 JQ781940_MAST-1D_Stramenopiles
## 57 FJ537481_Dinophyceae_Alveolata
## 87 JQ782036_MAST-1C_Stramenopiles
## 92 EU818104_Dinophyceae_Alveolata
## 12 GQ913054_MALV-I_Alveolata
## 7 GQ382836_MALV-III_Alveolata
## 45 EU793869_MALV-II_Alveolata
## 95 EF172961_MAST-3A_Stramenopiles
## 61 EU561942_Dinophyceae_Alveolata
## 54 GQ382841_Dinophyceae_Alveolata
## 88 EU793665_MALV-I_Alveolata
## 82 EU793454_MALV-II_Alveolata
## 68 AY426916_Dinophyceae_Alveolata
## 51 ZZ0026100_Picobiliphyta_Hacrobia
## 17 EU561774_Dinophyceae_Alveolata
## 11 EU793725_Dinophyceae_Alveolata
## 23 EU793906_MALV-II_Alveolata
## 22 EU793270_MALV-I_Alveolata
## 30 AY426873_MALV-I_Alveolata
## 90 DQ917937_MALV-III_Alveolata
## 83 EU793310_Dinophyceae_Alveolata
## 84 EU500204_Dinophyceae_Alveolata
## 20 EF539143_Picobiliphyta_Hacrobia
## 46 AJ965134_MALV-II_Alveolata
## 48 EU793161_MALV-I_Alveolata
## 70 JQ782043_MAST-4A_Stramenopiles
## 85 EU817904_MALV-I_Alveolata
## 89 EU793160_MALV-II_Alveolata
## 100 EU793515_MALV-III_Alveolata
## 19 EF173010_MAST-1D_Stramenopiles
## 24 AB241.O08_Dictyochophytes_Stramenopiles
## 43 EU793423_MALV-I_Alveolata
## 53 AY129057_MALV-II_Alveolata
## 59 EU793849_MALV-I_Alveolata
## 65 EU500119_Centroheliozoa_Hacrobia
## 36 EU780618_Dinophyceae_Alveolata
## 55 AY938154_Dinophyceae_Alveolata
## 35 EU793623_Dinophyceae_Alveolata
## 42 GQ383169_MALV-II_Alveolata
## 40 EU561962_MALV-I_Alveolata
## 50 EU793876_MALV-I_Alveolata
## 75 EU793591_MALV-II_Alveolata
## 73 EU793359_MALV-I_Alveolata
## 10 EF526792_Dinophyceae_Alveolata
## 102 EU561765_MALV-I_Alveolata
## 38 GQ382521_MALV-I_Alveolata
## 32 EU793396_MALV-II_Alveolata
## 64 EU562105_MALV-V_Alveolata
## 67 EU793900_MALV-II_Alveolata
## 76 GQ382775_MALV-I_Alveolata
## 5 EU500081_MAST-25_Stramenopiles
## 9 EU780632_Dinophyceae_Alveolata
## 26 EU793496_MALV-II_Alveolata
## 60 EU818099_MALV-I_Alveolata
## 97 EU793151_MALV-II_Alveolata
## 98 <NA>
## 99 EU818216_MALV-II_Alveolata
## 33 DQ918674_MALV-I_Alveolata
## 28 EU561799_Katablepharidales_Hacrobia
## 2 EU818180_MALV-II_Alveolata
## 80 EU793880_MALV-V_Alveolata
## 14 DQ119999_Telonemia_Hacrobia
## 41 EU562164_MALV-II_Alveolata
## 96 FJ537409_MALV-II_Alveolata
## 91 EU817983_MALV-II_Alveolata
## 25 EF172998_Chrysophytes_Stramenopiles
## 58 EU793662_MALV-II_Alveolata
## 101 EU793592_MALV-II_Alveolata
## 6 EU818437_MALV-I_Alveolata
## 71 EU793570_MALV-I_Alveolata
## 56 FJ537453_MALV-II_Alveolata
## 29 FJ537539_MALV-II_Alveolata
## 44 EU793161_MALV-I_Alveolata
## 52 EU793316_MALV-II_Alveolata
## 3 EU793860_MALV-II_Alveolata
## 18 EU793353_MALV-II_Alveolata
## 8 EU561885_Dinophyceae_Alveolata
## 104 EU817986_MALV-II_Alveolata
## 103 EU793360_MALV-I_Alveolata
## 15 EU793468_MALV-II_Alveolata
## 21 EU793410_MALV-II_Alveolata
## 93 EU561991_MALV-I_Alveolata
## 72 AY665057_MALV-I_Alveolata
## 13 AY937485_MALV-II_Alveolata
## 79 EU818263_MALV-II_Alveolata
## 78 GQ913026_Acantharea_Rhizaria
## 27 EU793607_MALV-I_Alveolata
## 31 HQ869203_MAST-4E_Stramenopiles
## 69 EU818388_MALV-I_Alveolata
## 4 DQ918857_MALV-II_Alveolata
## SILVA_classif
## 77 EF172947.1.1553_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 39 FJ832119.1.1585_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_picoplankton
## 94 EU780613.1.1717_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 47 AY664971.1.1755_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 49 KC488491.1.1699_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;uncultured_marine_alveolate
## 1 KC488417.1.1688_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gymnodinium_clade;FV18-2D9;uncultured_dinoflagellate
## 16 EU793930.1.1664_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 86 KC582919.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 62 KC488405.1.1558_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gymnodinium_clade;Erythropsidinium;uncultured_dinoflagellate
## 34 AY664924.1.1754_Eukaryota;SAR;Alveolata;OLI11255;uncultured_eukaryote
## 66 GU825491.1.1212_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;uncultured_eukaryote
## 37 JX188306.1.1756_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_eukaryote
## 63 KC582936.1.1795_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;SCM27C9;uncultured_alveolate
## 81 JX188299.1.1773_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 74 GU823346.1.1201_Eukaryota;SAR;Stramenopiles;MAST-1;MAST-1D;uncultured_stramenopile
## 57 AY664971.1.1755_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 87 JQ782036.1.1785_Eukaryota;SAR;Stramenopiles;MAST-1;MAST-1C;uncultured_stramenopile
## 92 KC582936.1.1795_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;SCM27C9;uncultured_alveolate
## 12 EU793918.1.1662_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 7 JX188308.1.1760_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;uncultured_eukaryote
## 45 EU780594.1.1712_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 95 JQ782026.1.1809_Eukaryota;SAR;Stramenopiles;MAST-3;MAST-3F;uncultured_stramenopile
## 61 FJ832106.1.1588_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gyrodinium;uncultured_marine_plankton
## 54 AY664962.1.1755_Eukaryota;SAR;Alveolata;Dinoflagellata;uncultured_eukaryote
## 88 EU371330.1.1733_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_eukaryote
## 82 JF791018.1.1777_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 68 KC488407.1.1693_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;B7;uncultured_dinoflagellate
## 51 DQ222879.1.1791_Eukaryota;Picozoa;Picomonadea;uncultured_phototrophic_eukaryote
## 17 JX840913.1.1300_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 11 JX188293.1.1759_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 23 JX173254.1.1528_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;Amoebophrya_sp._ex_Alexandrium_sp
## 22 JX188350.1.1750_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 30 FJ832119.1.1585_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_picoplankton
## 90 AJ402349.1.1758_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;eukaryote_clone_OLI11005
## 83 JX188327.1.1759_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Kareniaceae;Karlodinium;uncultured_eukaryote
## 84 EU446398.1.1566_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Kareniaceae;Karlodinium;uncultured_marine_eukaryote
## 20 HQ868687.1.903_Eukaryota;Picozoa;Picomonadea;Picomonadida;uncultured_eukaryote
## 46 JX840907.1.1356_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;uncultured_dinoflagellate
## 48 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 70 JQ781967.1.1805_Eukaryota;SAR;Stramenopiles;MAST-4;uncultured_stramenopile
## 85 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 89 KC582890.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 100 AJ402349.1.1758_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_III;eukaryote_clone_OLI11005
## 19 GU823346.1.1201_Eukaryota;SAR;Stramenopiles;MAST-1;MAST-1D;uncultured_stramenopile
## 24 KC582988.1.1798_Eukaryota;SAR;Stramenopiles;Ochrophyta;Dictyochophyceae;Pedinellales;uncultured_stramenopile
## 43 FR874416.1.1792_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_picoeukaryote
## 53 AY129057.1.1798_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_eukaryote
## 59 AY665036.1.1748_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 65 AY749516.1.1576_Eukaryota;Centrohelida;H26-1;uncultured_eukaryote
## 36 EU780618.1.1706_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;SCM27C9;uncultured_eukaryote
## 55 AF022199.1.1803_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;Gymnodiniphycidae;Gymnodinium_clade;Lepidodinium;Lepidodinium_viride
## 35 JX840913.1.1300_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 42 AF239260.1.1699_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Amoebophrya;Amoebophrya_sp._'Dinophysis'
## 40 KC488485.1.1680_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_alveolate
## 50 EU371330.1.1733_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_eukaryote
## 75 AACY020216037.2.1465_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;marine_metagenome
## 73 DQ145114.1.1728_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 10 EF526792.1.1343_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_marine_eukaryote
## 102 EU780603.1.1587_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 38 GU819857.1.1220_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_dinoflagellate
## 32 KC582887.1.1798_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 64 EU793370.1.1678_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_syndiniales
## 67 EU793381.1.1670_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 76 FN263031.1.1789_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_alveolate
## 5 <NA>
## 9 AY664888.1.1754_Eukaryota;SAR;Alveolata;Dinoflagellata;Dinophyceae;SCM37C58;uncultured_eukaryote
## 26 KC582897.1.1794_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 60 KC488409.1.1674_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_dinoflagellate
## 97 EU793367.1.1601_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 98 <NA>
## 99 EU793678.1.1564_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 33 EU780589.1.1635_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 28 JN832733.1.1713_Eukaryota;Cryptophyceae;Kathablepharidae;Leucocryptos;uncultured_eukaryote
## 2 EU793418.1.1665_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 80 EU793392.1.1594_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_V;uncultured_syndiniales
## 14 GQ365865.1.1537_Eukaryota;Incertae_Sedis;Telonema;uncultured_eukaryote
## 41 KC582930.1.1796_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 96 JX840917.1.1201_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 91 KC582884.1.1799_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 25 KC582995.1.1780_Eukaryota;SAR;Stramenopiles;Ochrophyta;Chrysophyceae;E222;uncultured_stramenopile
## 58 FJ832105.1.1591_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_plankton
## 101 EU793840.1.1684_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 6 AY665056.1.1740_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 71 AY665031.1.1749_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 56 GU820026.1.1394_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellate
## 29 KC582941.1.1793_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 44 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 52 EF172960.1.1674_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 3 FJ832116.1.1590_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_marine_plankton
## 18 KC582893.1.1795_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 8 JX188356.1.1758_Eukaryota;SAR;Alveolata;SCM37C52;uncultured_eukaryote
## 104 JX188283.1.1756_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_eukaryote
## 103 EF172986.1.1644_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 15 EU793930.1.1664_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_syndiniales
## 21 KC582920.1.1797_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 93 JQ420086.1.1778_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_phytoplankton
## 72 KC488460.1.1689_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_marine_alveolate
## 13 KC582930.1.1796_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_alveolate
## 79 <NA>
## 78 JN811213.1.1672_Eukaryota;SAR;Rhizaria;Retaria;Acantharia;Arthracanthida;Acanthometra;Xiphacantha_alata
## 27 AY665036.1.1748_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_eukaryote
## 31 JQ782054.1.1813_Eukaryota;SAR;Stramenopiles;MAST-4;uncultured_stramenopile
## 69 EU793901.1.1663_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_I;uncultured_syndiniales
## 4 GU820026.1.1394_Eukaryota;SAR;Alveolata;Protalveolata;Syndiniales;Syndiniales_Group_II;uncultured_dinoflagellateNumber and proportion (%) of cosmopolitan OTUs:
## [1] 104## [1] 0.2715688Number and proportion (%) of rare OTUs:
## [1] 32563## [1] 85.029771.6) Taxonomic composition analysis
1.6.1) Normalized data
No. of OTUs and reads of the rearefied dataset:
## [1] 38296## [1] 4547725
Number and proportion (%) of OTUs of phototrophic groups:
## [1] 11820## [1] 30.86484Number and proportion (%) of reads of phototrophic groups:
## [1] 951002## [1] 20.9116
Number and proportion (%) of OTUs of non-phototrophic groups:
## [1] 26561## [1] 69.14946Number and proportion (%) of reads of non-phototrophic groups:
## [1] 3596869## [1] 79.09161
PHOTOTROPHS + HETEROTROPHS
Absolute values
## reads_per_class OTUs_per_class samples_per_class
## 59 1 NA
## Bacillariophyceae 3636 98 88
## Bolidophyceae 2971 15 89
## Chlorarachniophyceae 3335 70 89
## Chrysophyceae 79873 361 91
## Cryptophyceae 9910 77 80
## Dictyochophyceae 39444 237 91
## Dinophyceae 650673 9894 91
## Eustigmatales 232 9 NA
## Heterotrophs 3596869 26561 91
## MOCH-1 4357 70 NA
## MOCH-2 17109 131 NA
## MOCH-5 2431 19 NA
## Mamiellophyceae 340 32 41
## Pelagophyceae 46796 339 90
## Pinguiophyceae 1544 19 86
## Prasinophyceae 51033 191 NA
## Prasinophyceae_clade-IX 11979 79 87
## Prasinophyceae_clade-VII 23960 125 87
## Prymnesiophyceae 399 62 76
## Pyramimonadaceae 113 3 7
## Raphydophyceae 211 4 51
## Trebouxiophyceae 103 3 4
## Ulvophyceae 16 3 4
## other_Prasinophyceae 332 8 54
Relative values
## reads_per_class OTUs_per_class samples_per_class
## 100 100 NA## reads_per_class OTUs_per_class samples_per_class
## 1.297352e-03 0.002603421 NA
## Bacillariophyceae 7.995206e-02 0.255135248 96.703297
## Bolidophyceae 6.532937e-02 0.039051313 97.802198
## Chlorarachniophyceae 7.333337e-02 0.182239463 97.802198
## Chrysophyceae 1.756329e+00 0.939834943 100.000000
## Cryptophyceae 2.179112e-01 0.200463409 87.912088
## Dictyochophyceae 8.673348e-01 0.617010752 100.000000
## Dinophyceae 1.430766e+01 25.758246336 100.000000
## Eustigmatales 5.101452e-03 0.023430788 NA
## Heterotrophs 7.909161e+01 69.149462394 100.000000
## MOCH-1 9.580614e-02 0.182239463 NA
## MOCH-2 3.762101e-01 0.341048137 NA
## MOCH-5 5.345530e-02 0.049464997 NA
## Mamiellophyceae 7.476266e-03 0.083309469 45.054945
## Pelagophyceae 1.028998e+00 0.882559683 98.901099
## Pinguiophyceae 3.395104e-02 0.049464997 94.505495
## Prasinophyceae 1.122165e+00 0.497253391 NA
## Prasinophyceae_clade-IX 2.634064e-01 0.205670251 95.604396
## Prasinophyceae_clade-VII 5.268568e-01 0.325427612 95.604396
## Prymnesiophyceae 8.773618e-03 0.161412095 83.516484
## Pyramimonadaceae 2.484759e-03 0.007810263 7.692308
## Raphydophyceae 4.639682e-03 0.010413684 56.043956
## Trebouxiophyceae 2.264869e-03 0.007810263 4.395604
## Ulvophyceae 3.518243e-04 0.007810263 4.395604
## other_Prasinophyceae 7.300353e-03 0.020827367 59.340659
Reads per class vs. OTUs per class:
Reads per class vs. samples in which they occurr:
PHOTOTROPHS
Absolute values
## reads_per_class OTUs_per_class samples_per_class
## 51 1 NA
## Bacillariophyceae 3635 92 89
## Bolidophyceae 2987 15 89
## Chlorarachniophyceae 3342 72 88
## Chrysophyceae 79690 360 91
## Cryptophyceae 9910 79 81
## Dictyochophyceae 39444 234 91
## Dinophyceae 650691 9852 91
## Eustigmatales 229 9 NA
## MOCH-1 4340 69 NA
## MOCH-2 17116 132 NA
## MOCH-5 2439 21 NA
## Mamiellophyceae 345 33 43
## Pelagophyceae 46764 346 90
## Pinguiophyceae 1553 22 86
## Prasinophyceae 51371 193 NA
## Prasinophyceae_clade-IX 11946 79 87
## Prasinophyceae_clade-VII 23980 129 88
## Prymnesiophyceae 402 60 76
## Pyramimonadaceae 106 3 7
## Raphydophyceae 197 4 49
## Trebouxiophyceae 108 3 4
## Ulvophyceae 16 3 4
## other_Prasinophyceae 340 9 50
Relative values
## reads_per_class OTUs_per_class samples_per_class
## 100 100 NA## reads_per_class OTUs_per_class samples_per_class
## 0.005362765 0.008460237 NA
## Bacillariophyceae 0.382228429 0.778341794 97.802198
## Bolidophyceae 0.314089771 0.126903553 97.802198
## Chlorarachniophyceae 0.351418819 0.609137056 96.703297
## Chrysophyceae 8.379582798 3.045685279 100.000000
## Cryptophyceae 1.042058797 0.668358714 89.010989
## Dictyochophyceae 4.147625347 1.979695431 100.000000
## Dinophyceae 68.421622667 83.350253807 100.000000
## Eustigmatales 0.024079865 0.076142132 NA
## MOCH-1 0.456360765 0.583756345 NA
## MOCH-2 1.799785910 1.116751269 NA
## MOCH-5 0.256466338 0.177664975 NA
## Mamiellophyceae 0.036277526 0.279187817 47.252747
## Pelagophyceae 4.917339816 2.927241963 98.901099
## Pinguiophyceae 0.163301444 0.186125212 94.505495
## Prasinophyceae 5.401776232 1.632825719 NA
## Prasinophyceae_clade-IX 1.256148778 0.668358714 95.604396
## Prasinophyceae_clade-VII 2.521550954 1.091370558 96.703297
## Prymnesiophyceae 0.042271204 0.507614213 83.516484
## Pyramimonadaceae 0.011146138 0.025380711 7.692308
## Raphydophyceae 0.020714993 0.033840948 53.846154
## Trebouxiophyceae 0.011356443 0.025380711 4.395604
## Ulvophyceae 0.001682436 0.025380711 4.395604
## other_Prasinophyceae 0.035751765 0.076142132 54.945055
Reads per class vs. OTUs per class:
Reads per class vs. samples in which they occurr:
1.6.2) Non-rarefied data
No. of OTUs and reads of the rearefied dataset:
## [1] 43734## [1] 12250242
Number and proportion (%) of OTUs of phototrophic groups:
## [1] 13555## [1] 30.99419Number and proportion (%) of reads of phototrophic groups:
## [1] 1225053## [1] 21.25673
Number and proportion (%) of OTUs of non-phototrophic groups:
## [1] 30179## [1] 69.00581Number and proportion (%) of reads of non-phototrophic groups:
## [1] 4538078## [1] 78.74327
PHOTOTROPHS + HETEROTROPHS
Absolute values
## reads_per_class OTUs_per_class samples_per_class
## 150 1 NA
## Bacillariophyceae 9195 109 89
## Bolidophyceae 7156 16 89
## Chlorarachniophyceae 10036 80 89
## Chrysophyceae 192835 418 91
## Cryptophyceae 27260 95 81
## Dictyochophyceae 104205 264 91
## Dinophyceae 1769257 11319 91
## Eustigmatales 573 9 NA
## Heterotrophs 9735134 30179 91
## MOCH-1 13716 83 NA
## MOCH-2 45703 153 NA
## MOCH-5 7015 25 NA
## Mamiellophyceae 931 35 48
## Pelagophyceae 121087 386 90
## Pinguiophyceae 5296 27 89
## Prasinophyceae 111285 218 NA
## Prasinophyceae_clade-IX 29715 86 87
## Prasinophyceae_clade-VII 56610 133 88
## Prymnesiophyceae 1072 74 80
## Pyramimonadaceae 254 3 7
## Raphydophyceae 664 4 62
## Trebouxiophyceae 193 3 4
## Ulvophyceae 50 3 5
## other_Prasinophyceae 850 11 59
Relative values
## reads_per_class OTUs_per_class samples_per_class
## 100 100 NA## reads_per_class OTUs_per_class samples_per_class
## 1.224466e-03 0.002286551 NA
## Bacillariophyceae 7.505974e-02 0.249234006 97.802198
## Bolidophyceae 5.841517e-02 0.036584808 97.802198
## Chlorarachniophyceae 8.192491e-02 0.182924041 97.802198
## Chrysophyceae 1.574132e+00 0.955778113 100.000000
## Cryptophyceae 2.225262e-01 0.217222298 89.010989
## Dictyochophyceae 8.506363e-01 0.603649335 100.000000
## Dinophyceae 1.444263e+01 25.881465222 100.000000
## Eustigmatales 4.677459e-03 0.020578955 NA
## Heterotrophs 7.946891e+01 69.005807838 100.000000
## MOCH-1 1.119651e-01 0.189783692 NA
## MOCH-2 3.730783e-01 0.349842228 NA
## MOCH-5 5.726417e-02 0.057163763 NA
## Mamiellophyceae 7.599850e-03 0.080029268 52.747253
## Pelagophyceae 9.884458e-01 0.882608497 98.901099
## Pinguiophyceae 4.323180e-02 0.061736864 97.802198
## Prasinophyceae 9.084310e-01 0.498468011 NA
## Prasinophyceae_clade-IX 2.425666e-01 0.196643344 95.604396
## Prasinophyceae_clade-VII 4.621133e-01 0.304111218 96.703297
## Prymnesiophyceae 8.750848e-03 0.169204738 87.912088
## Pyramimonadaceae 2.073428e-03 0.006859652 7.692308
## Raphydophyceae 5.420301e-03 0.009146202 68.131868
## Trebouxiophyceae 1.575479e-03 0.006859652 4.395604
## Ulvophyceae 4.081552e-04 0.006859652 5.494505
## other_Prasinophyceae 6.938638e-03 0.025152056 64.835165
Reads per class vs. OTUs per class:
Reads per class vs. samples in which they occurr:
PHOTOTROPHS
Absolute values
## reads_per_class OTUs_per_class samples_per_class
## 150 1 NA
## Bacillariophyceae 9195 109 89
## Bolidophyceae 7156 16 89
## Chlorarachniophyceae 10036 80 89
## Chrysophyceae 192835 418 91
## Cryptophyceae 27260 95 81
## Dictyochophyceae 104205 264 91
## Dinophyceae 1769257 11319 91
## Eustigmatales 573 9 NA
## MOCH-1 13716 83 NA
## MOCH-2 45703 153 NA
## MOCH-5 7015 25 NA
## Mamiellophyceae 931 35 48
## Pelagophyceae 121087 386 90
## Pinguiophyceae 5296 27 89
## Prasinophyceae 111285 218 NA
## Prasinophyceae_clade-IX 29715 86 87
## Prasinophyceae_clade-VII 56610 133 88
## Prymnesiophyceae 1072 74 80
## Pyramimonadaceae 254 3 7
## Raphydophyceae 664 4 62
## Trebouxiophyceae 193 3 4
## Ulvophyceae 50 3 5
## other_Prasinophyceae 850 11 59
Relative values
## reads_per_class OTUs_per_class samples_per_class
## 100 100 NA## reads_per_class OTUs_per_class samples_per_class
## 0.005963959 0.007377352 NA
## Bacillariophyceae 0.365590663 0.804131317 97.802198
## Bolidophyceae 0.284520585 0.118037624 97.802198
## Chlorarachniophyceae 0.399028590 0.590188122 97.802198
## Chrysophyceae 7.667066384 3.083732940 100.000000
## Cryptophyceae 1.083850077 0.700848395 89.010989
## Dictyochophyceae 4.143162043 1.947620804 100.000000
## Dinophyceae 70.345170068 83.504241977 100.000000
## Eustigmatales 0.022782322 0.066396164 NA
## MOCH-1 0.545344375 0.612320177 NA
## MOCH-2 1.817138668 1.128734784 NA
## MOCH-5 0.278914464 0.184433788 NA
## Mamiellophyceae 0.037016303 0.258207304 52.747253
## Pelagophyceae 4.814385704 2.847657691 98.901099
## Pinguiophyceae 0.210567498 0.199188491 97.802198
## Prasinophyceae 4.424660889 1.608262634 NA
## Prasinophyceae_clade-IX 1.181460200 0.634452232 95.604396
## Prasinophyceae_clade-VII 2.250797978 0.981187754 96.703297
## Prymnesiophyceae 0.042622424 0.545924013 87.912088
## Pyramimonadaceae 0.010098970 0.022132055 7.692308
## Raphydophyceae 0.026400457 0.029509406 68.131868
## Trebouxiophyceae 0.007673627 0.022132055 4.395604
## Ulvophyceae 0.001987986 0.022132055 5.494505
## other_Prasinophyceae 0.033795765 0.081150867 64.835165
Reads per class vs. OTUs per class:
Reads per class vs. samples in which they occurr:
